In 1998 Lee founded the Henry C. Lee Institute of Forensic Science to promote the advancement of forensic science. He served as Connecticut's commissioner of public safety from 1998 to 2000 and was chief for the Scientific Services in the state.
Lee remained a full professor at the University of New Haven into the twenty-first century and has served as a visiting professor at eight other universities. A widely published author, Lee remains active on the lecture circuit as well. In his 2002 book Cracking Cases, Lee thanked his 105-year-old mother, An-Fu-Lee, for her support and encouragement over the years for both himself and his twelve siblings.
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